pyemma.coordinates.clustering.KmeansClustering
==============================================

.. currentmodule:: pyemma.coordinates.clustering

.. autoclass:: KmeansClustering

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~KmeansClustering._Loggable__create_logger
      ~KmeansClustering._ProgressReporterMixin__check_stage_registered
      ~KmeansClustering._SerializableMixIn__interpolate
      ~KmeansClustering.__delattr__
      ~KmeansClustering.__dir__
      ~KmeansClustering.__eq__
      ~KmeansClustering.__format__
      ~KmeansClustering.__ge__
      ~KmeansClustering.__getattribute__
      ~KmeansClustering.__getstate__
      ~KmeansClustering.__gt__
      ~KmeansClustering.__hash__
      ~KmeansClustering.__init__
      ~KmeansClustering.__init_subclass__
      ~KmeansClustering.__iter__
      ~KmeansClustering.__le__
      ~KmeansClustering.__lt__
      ~KmeansClustering.__my_getstate__
      ~KmeansClustering.__my_setstate__
      ~KmeansClustering.__ne__
      ~KmeansClustering.__new__
      ~KmeansClustering.__reduce__
      ~KmeansClustering.__reduce_ex__
      ~KmeansClustering.__repr__
      ~KmeansClustering.__setattr__
      ~KmeansClustering.__setstate__
      ~KmeansClustering.__sizeof__
      ~KmeansClustering.__str__
      ~KmeansClustering.__subclasshook__
      ~KmeansClustering._check_estimated
      ~KmeansClustering._check_resume_iteration
      ~KmeansClustering._chunk_finite
      ~KmeansClustering._cleanup_logger
      ~KmeansClustering._clear_in_memory
      ~KmeansClustering._collect_data
      ~KmeansClustering._compute_default_cs
      ~KmeansClustering._create_iterator
      ~KmeansClustering._data_flow_chain
      ~KmeansClustering._estimate
      ~KmeansClustering._finish_estimate
      ~KmeansClustering._get_classes_to_inspect
      ~KmeansClustering._get_interpolation_map
      ~KmeansClustering._get_model_param_names
      ~KmeansClustering._get_param_names
      ~KmeansClustering._get_private_field
      ~KmeansClustering._get_serialize_fields
      ~KmeansClustering._get_state_of_serializeable_fields
      ~KmeansClustering._get_traj_info
      ~KmeansClustering._get_version
      ~KmeansClustering._get_version_for_class_from_state
      ~KmeansClustering._init_estimate
      ~KmeansClustering._init_in_memory_chunks
      ~KmeansClustering._initialize_centers
      ~KmeansClustering._logger_is_active
      ~KmeansClustering._map_to_memory
      ~KmeansClustering._progress_context
      ~KmeansClustering._progress_force_finish
      ~KmeansClustering._progress_register
      ~KmeansClustering._progress_set_description
      ~KmeansClustering._progress_update
      ~KmeansClustering._set_random_access_strategies
      ~KmeansClustering._set_state_from_serializeable_fields_and_state
      ~KmeansClustering._source_from_memory
      ~KmeansClustering._transform_array
      ~KmeansClustering.assign
      ~KmeansClustering.describe
      ~KmeansClustering.dimension
      ~KmeansClustering.estimate
      ~KmeansClustering.fit
      ~KmeansClustering.fit_predict
      ~KmeansClustering.fit_transform
      ~KmeansClustering.get_model_params
      ~KmeansClustering.get_output
      ~KmeansClustering.get_params
      ~KmeansClustering.iterator
      ~KmeansClustering.load
      ~KmeansClustering.n_chunks
      ~KmeansClustering.n_frames_total
      ~KmeansClustering.number_of_trajectories
      ~KmeansClustering.output_type
      ~KmeansClustering.sample_indexes_by_cluster
      ~KmeansClustering.save
      ~KmeansClustering.save_dtrajs
      ~KmeansClustering.set_model_params
      ~KmeansClustering.set_params
      ~KmeansClustering.trajectory_length
      ~KmeansClustering.trajectory_lengths
      ~KmeansClustering.transform
      ~KmeansClustering.update_model_params
      ~KmeansClustering.write_to_csv
      ~KmeansClustering.write_to_hdf5
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~KmeansClustering._AbstractClustering__serialize_fields
      ~KmeansClustering._AbstractClustering__serialize_version
      ~KmeansClustering._DataSource__serialize_fields
      ~KmeansClustering._Estimator__serialize_fields
      ~KmeansClustering._FALLBACK_CHUNKSIZE
      ~KmeansClustering._InMemoryMixin__serialize_fields
      ~KmeansClustering._InMemoryMixin__serialize_version
      ~KmeansClustering._KmeansClustering__serialize_fields
      ~KmeansClustering._KmeansClustering__serialize_version
      ~KmeansClustering._Loggable__ids
      ~KmeansClustering._Loggable__refs
      ~KmeansClustering._SerializableMixIn__serialize_fields
      ~KmeansClustering._SerializableMixIn__serialize_modifications_map
      ~KmeansClustering._SerializableMixIn__serialize_version
      ~KmeansClustering.__abstractmethods__
      ~KmeansClustering.__dict__
      ~KmeansClustering.__doc__
      ~KmeansClustering.__module__
      ~KmeansClustering.__weakref__
      ~KmeansClustering._abc_impl
      ~KmeansClustering._estimated
      ~KmeansClustering._estimator_type
      ~KmeansClustering._loglevel_CRITICAL
      ~KmeansClustering._loglevel_DEBUG
      ~KmeansClustering._loglevel_ERROR
      ~KmeansClustering._loglevel_INFO
      ~KmeansClustering._loglevel_WARN
      ~KmeansClustering._pg_threshold
      ~KmeansClustering._prog_rep_callbacks
      ~KmeansClustering._prog_rep_descriptions
      ~KmeansClustering._prog_rep_progressbars
      ~KmeansClustering._progress_num_registered
      ~KmeansClustering._progress_registered_stages
      ~KmeansClustering._save_data_producer
      ~KmeansClustering._serialize_version
      ~KmeansClustering.chunksize
      ~KmeansClustering.cluster_centers_
      ~KmeansClustering.clustercenters
      ~KmeansClustering.converged
      ~KmeansClustering.data_producer
      ~KmeansClustering.default_chunksize
      ~KmeansClustering.dtrajs
      ~KmeansClustering.filenames
      ~KmeansClustering.fixed_seed
      ~KmeansClustering.in_memory
      ~KmeansClustering.index_clusters
      ~KmeansClustering.init_strategy
      ~KmeansClustering.is_random_accessible
      ~KmeansClustering.is_reader
      ~KmeansClustering.logger
      ~KmeansClustering.model
      ~KmeansClustering.n_jobs
      ~KmeansClustering.name
      ~KmeansClustering.ndim
      ~KmeansClustering.ntraj
      ~KmeansClustering.overwrite_dtrajs
      ~KmeansClustering.ra_itraj_cuboid
      ~KmeansClustering.ra_itraj_jagged
      ~KmeansClustering.ra_itraj_linear
      ~KmeansClustering.ra_linear
      ~KmeansClustering.show_progress