pyemma.coordinates.clustering.MiniBatchKmeansClustering
=======================================================

.. currentmodule:: pyemma.coordinates.clustering

.. autoclass:: MiniBatchKmeansClustering

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~MiniBatchKmeansClustering._Loggable__create_logger
      ~MiniBatchKmeansClustering._ProgressReporterMixin__check_stage_registered
      ~MiniBatchKmeansClustering._SerializableMixIn__interpolate
      ~MiniBatchKmeansClustering.__delattr__
      ~MiniBatchKmeansClustering.__dir__
      ~MiniBatchKmeansClustering.__eq__
      ~MiniBatchKmeansClustering.__format__
      ~MiniBatchKmeansClustering.__ge__
      ~MiniBatchKmeansClustering.__getattribute__
      ~MiniBatchKmeansClustering.__getstate__
      ~MiniBatchKmeansClustering.__gt__
      ~MiniBatchKmeansClustering.__hash__
      ~MiniBatchKmeansClustering.__init__
      ~MiniBatchKmeansClustering.__init_subclass__
      ~MiniBatchKmeansClustering.__iter__
      ~MiniBatchKmeansClustering.__le__
      ~MiniBatchKmeansClustering.__lt__
      ~MiniBatchKmeansClustering.__my_getstate__
      ~MiniBatchKmeansClustering.__my_setstate__
      ~MiniBatchKmeansClustering.__ne__
      ~MiniBatchKmeansClustering.__new__
      ~MiniBatchKmeansClustering.__reduce__
      ~MiniBatchKmeansClustering.__reduce_ex__
      ~MiniBatchKmeansClustering.__repr__
      ~MiniBatchKmeansClustering.__setattr__
      ~MiniBatchKmeansClustering.__setstate__
      ~MiniBatchKmeansClustering.__sizeof__
      ~MiniBatchKmeansClustering.__str__
      ~MiniBatchKmeansClustering.__subclasshook__
      ~MiniBatchKmeansClustering._check_estimated
      ~MiniBatchKmeansClustering._check_resume_iteration
      ~MiniBatchKmeansClustering._chunk_finite
      ~MiniBatchKmeansClustering._cleanup_logger
      ~MiniBatchKmeansClustering._clear_in_memory
      ~MiniBatchKmeansClustering._collect_data
      ~MiniBatchKmeansClustering._compute_default_cs
      ~MiniBatchKmeansClustering._create_iterator
      ~MiniBatchKmeansClustering._data_flow_chain
      ~MiniBatchKmeansClustering._draw_mini_batch_sample
      ~MiniBatchKmeansClustering._estimate
      ~MiniBatchKmeansClustering._finish_estimate
      ~MiniBatchKmeansClustering._get_classes_to_inspect
      ~MiniBatchKmeansClustering._get_interpolation_map
      ~MiniBatchKmeansClustering._get_model_param_names
      ~MiniBatchKmeansClustering._get_param_names
      ~MiniBatchKmeansClustering._get_private_field
      ~MiniBatchKmeansClustering._get_serialize_fields
      ~MiniBatchKmeansClustering._get_state_of_serializeable_fields
      ~MiniBatchKmeansClustering._get_traj_info
      ~MiniBatchKmeansClustering._get_version
      ~MiniBatchKmeansClustering._get_version_for_class_from_state
      ~MiniBatchKmeansClustering._init_estimate
      ~MiniBatchKmeansClustering._init_in_memory_chunks
      ~MiniBatchKmeansClustering._initialize_centers
      ~MiniBatchKmeansClustering._logger_is_active
      ~MiniBatchKmeansClustering._map_to_memory
      ~MiniBatchKmeansClustering._progress_context
      ~MiniBatchKmeansClustering._progress_force_finish
      ~MiniBatchKmeansClustering._progress_register
      ~MiniBatchKmeansClustering._progress_set_description
      ~MiniBatchKmeansClustering._progress_update
      ~MiniBatchKmeansClustering._set_random_access_strategies
      ~MiniBatchKmeansClustering._set_state_from_serializeable_fields_and_state
      ~MiniBatchKmeansClustering._source_from_memory
      ~MiniBatchKmeansClustering._transform_array
      ~MiniBatchKmeansClustering.assign
      ~MiniBatchKmeansClustering.describe
      ~MiniBatchKmeansClustering.dimension
      ~MiniBatchKmeansClustering.estimate
      ~MiniBatchKmeansClustering.fit
      ~MiniBatchKmeansClustering.fit_predict
      ~MiniBatchKmeansClustering.fit_transform
      ~MiniBatchKmeansClustering.get_model_params
      ~MiniBatchKmeansClustering.get_output
      ~MiniBatchKmeansClustering.get_params
      ~MiniBatchKmeansClustering.iterator
      ~MiniBatchKmeansClustering.load
      ~MiniBatchKmeansClustering.n_chunks
      ~MiniBatchKmeansClustering.n_frames_total
      ~MiniBatchKmeansClustering.number_of_trajectories
      ~MiniBatchKmeansClustering.output_type
      ~MiniBatchKmeansClustering.sample_indexes_by_cluster
      ~MiniBatchKmeansClustering.save
      ~MiniBatchKmeansClustering.save_dtrajs
      ~MiniBatchKmeansClustering.set_model_params
      ~MiniBatchKmeansClustering.set_params
      ~MiniBatchKmeansClustering.trajectory_length
      ~MiniBatchKmeansClustering.trajectory_lengths
      ~MiniBatchKmeansClustering.transform
      ~MiniBatchKmeansClustering.update_model_params
      ~MiniBatchKmeansClustering.write_to_csv
      ~MiniBatchKmeansClustering.write_to_hdf5
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~MiniBatchKmeansClustering._AbstractClustering__serialize_fields
      ~MiniBatchKmeansClustering._AbstractClustering__serialize_version
      ~MiniBatchKmeansClustering._DataSource__serialize_fields
      ~MiniBatchKmeansClustering._Estimator__serialize_fields
      ~MiniBatchKmeansClustering._FALLBACK_CHUNKSIZE
      ~MiniBatchKmeansClustering._InMemoryMixin__serialize_fields
      ~MiniBatchKmeansClustering._InMemoryMixin__serialize_version
      ~MiniBatchKmeansClustering._KmeansClustering__serialize_fields
      ~MiniBatchKmeansClustering._KmeansClustering__serialize_version
      ~MiniBatchKmeansClustering._Loggable__ids
      ~MiniBatchKmeansClustering._Loggable__refs
      ~MiniBatchKmeansClustering._MiniBatchKmeansClustering__serialize_version
      ~MiniBatchKmeansClustering._SerializableMixIn__serialize_fields
      ~MiniBatchKmeansClustering._SerializableMixIn__serialize_modifications_map
      ~MiniBatchKmeansClustering._SerializableMixIn__serialize_version
      ~MiniBatchKmeansClustering.__abstractmethods__
      ~MiniBatchKmeansClustering.__dict__
      ~MiniBatchKmeansClustering.__doc__
      ~MiniBatchKmeansClustering.__module__
      ~MiniBatchKmeansClustering.__weakref__
      ~MiniBatchKmeansClustering._abc_impl
      ~MiniBatchKmeansClustering._estimated
      ~MiniBatchKmeansClustering._estimator_type
      ~MiniBatchKmeansClustering._loglevel_CRITICAL
      ~MiniBatchKmeansClustering._loglevel_DEBUG
      ~MiniBatchKmeansClustering._loglevel_ERROR
      ~MiniBatchKmeansClustering._loglevel_INFO
      ~MiniBatchKmeansClustering._loglevel_WARN
      ~MiniBatchKmeansClustering._pg_threshold
      ~MiniBatchKmeansClustering._prog_rep_callbacks
      ~MiniBatchKmeansClustering._prog_rep_descriptions
      ~MiniBatchKmeansClustering._prog_rep_progressbars
      ~MiniBatchKmeansClustering._progress_num_registered
      ~MiniBatchKmeansClustering._progress_registered_stages
      ~MiniBatchKmeansClustering._save_data_producer
      ~MiniBatchKmeansClustering._serialize_version
      ~MiniBatchKmeansClustering.chunksize
      ~MiniBatchKmeansClustering.cluster_centers_
      ~MiniBatchKmeansClustering.clustercenters
      ~MiniBatchKmeansClustering.converged
      ~MiniBatchKmeansClustering.data_producer
      ~MiniBatchKmeansClustering.default_chunksize
      ~MiniBatchKmeansClustering.dtrajs
      ~MiniBatchKmeansClustering.filenames
      ~MiniBatchKmeansClustering.fixed_seed
      ~MiniBatchKmeansClustering.in_memory
      ~MiniBatchKmeansClustering.index_clusters
      ~MiniBatchKmeansClustering.init_strategy
      ~MiniBatchKmeansClustering.is_random_accessible
      ~MiniBatchKmeansClustering.is_reader
      ~MiniBatchKmeansClustering.logger
      ~MiniBatchKmeansClustering.model
      ~MiniBatchKmeansClustering.n_jobs
      ~MiniBatchKmeansClustering.name
      ~MiniBatchKmeansClustering.ndim
      ~MiniBatchKmeansClustering.ntraj
      ~MiniBatchKmeansClustering.overwrite_dtrajs
      ~MiniBatchKmeansClustering.ra_itraj_cuboid
      ~MiniBatchKmeansClustering.ra_itraj_jagged
      ~MiniBatchKmeansClustering.ra_itraj_linear
      ~MiniBatchKmeansClustering.ra_linear
      ~MiniBatchKmeansClustering.show_progress