pyemma.coordinates.data.MDFeaturizer
====================================

.. currentmodule:: pyemma.coordinates.data

.. autoclass:: MDFeaturizer

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~MDFeaturizer._Loggable__create_logger
      ~MDFeaturizer._MDFeaturizer__add_feature
      ~MDFeaturizer._SerializableMixIn__interpolate
      ~MDFeaturizer.__delattr__
      ~MDFeaturizer.__dir__
      ~MDFeaturizer.__eq__
      ~MDFeaturizer.__format__
      ~MDFeaturizer.__ge__
      ~MDFeaturizer.__getattribute__
      ~MDFeaturizer.__getstate__
      ~MDFeaturizer.__gt__
      ~MDFeaturizer.__hash__
      ~MDFeaturizer.__init__
      ~MDFeaturizer.__init_subclass__
      ~MDFeaturizer.__le__
      ~MDFeaturizer.__lt__
      ~MDFeaturizer.__ne__
      ~MDFeaturizer.__new__
      ~MDFeaturizer.__reduce__
      ~MDFeaturizer.__reduce_ex__
      ~MDFeaturizer.__repr__
      ~MDFeaturizer.__setattr__
      ~MDFeaturizer.__setstate__
      ~MDFeaturizer.__sizeof__
      ~MDFeaturizer.__str__
      ~MDFeaturizer.__subclasshook__
      ~MDFeaturizer._check_indices
      ~MDFeaturizer._cleanup_logger
      ~MDFeaturizer._get_classes_to_inspect
      ~MDFeaturizer._get_interpolation_map
      ~MDFeaturizer._get_private_field
      ~MDFeaturizer._get_serialize_fields
      ~MDFeaturizer._get_state_of_serializeable_fields
      ~MDFeaturizer._get_version
      ~MDFeaturizer._get_version_for_class_from_state
      ~MDFeaturizer._logger_is_active
      ~MDFeaturizer._set_state_from_serializeable_fields_and_state
      ~MDFeaturizer.add_all
      ~MDFeaturizer.add_angles
      ~MDFeaturizer.add_backbone_torsions
      ~MDFeaturizer.add_chi1_torsions
      ~MDFeaturizer.add_contacts
      ~MDFeaturizer.add_custom_feature
      ~MDFeaturizer.add_custom_func
      ~MDFeaturizer.add_dihedrals
      ~MDFeaturizer.add_distances
      ~MDFeaturizer.add_distances_ca
      ~MDFeaturizer.add_group_COM
      ~MDFeaturizer.add_group_mindist
      ~MDFeaturizer.add_inverse_distances
      ~MDFeaturizer.add_minrmsd_to_ref
      ~MDFeaturizer.add_residue_COM
      ~MDFeaturizer.add_residue_mindist
      ~MDFeaturizer.add_selection
      ~MDFeaturizer.add_sidechain_torsions
      ~MDFeaturizer.describe
      ~MDFeaturizer.dimension
      ~MDFeaturizer.load
      ~MDFeaturizer.pairs
      ~MDFeaturizer.remove_all_custom_funcs
      ~MDFeaturizer.save
      ~MDFeaturizer.select
      ~MDFeaturizer.select_Backbone
      ~MDFeaturizer.select_Ca
      ~MDFeaturizer.select_Heavy
      ~MDFeaturizer.transform
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~MDFeaturizer._Loggable__ids
      ~MDFeaturizer._Loggable__refs
      ~MDFeaturizer._MDFeaturizer__serialize_fields
      ~MDFeaturizer._MDFeaturizer__serialize_version
      ~MDFeaturizer._SerializableMixIn__serialize_fields
      ~MDFeaturizer._SerializableMixIn__serialize_modifications_map
      ~MDFeaturizer._SerializableMixIn__serialize_version
      ~MDFeaturizer.__dict__
      ~MDFeaturizer.__doc__
      ~MDFeaturizer.__module__
      ~MDFeaturizer.__weakref__
      ~MDFeaturizer._loglevel_CRITICAL
      ~MDFeaturizer._loglevel_DEBUG
      ~MDFeaturizer._loglevel_ERROR
      ~MDFeaturizer._loglevel_INFO
      ~MDFeaturizer._loglevel_WARN
      ~MDFeaturizer._save_data_producer
      ~MDFeaturizer.logger
      ~MDFeaturizer.name
      ~MDFeaturizer.topologyfile