pyemma.coordinates.transform.VAMP
=================================

.. currentmodule:: pyemma.coordinates.transform

.. autoclass:: VAMP

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~VAMP._Loggable__create_logger
      ~VAMP._SerializableMixIn__interpolate
      ~VAMP.__delattr__
      ~VAMP.__dir__
      ~VAMP.__eq__
      ~VAMP.__format__
      ~VAMP.__ge__
      ~VAMP.__getattribute__
      ~VAMP.__getstate__
      ~VAMP.__gt__
      ~VAMP.__hash__
      ~VAMP.__init__
      ~VAMP.__init_subclass__
      ~VAMP.__iter__
      ~VAMP.__le__
      ~VAMP.__lt__
      ~VAMP.__my_getstate__
      ~VAMP.__my_setstate__
      ~VAMP.__ne__
      ~VAMP.__new__
      ~VAMP.__reduce__
      ~VAMP.__reduce_ex__
      ~VAMP.__repr__
      ~VAMP.__setattr__
      ~VAMP.__setstate__
      ~VAMP.__sizeof__
      ~VAMP.__str__
      ~VAMP.__subclasshook__
      ~VAMP._check_estimated
      ~VAMP._chunk_finite
      ~VAMP._cleanup_logger
      ~VAMP._clear_in_memory
      ~VAMP._compute_default_cs
      ~VAMP._create_iterator
      ~VAMP._data_flow_chain
      ~VAMP._estimate
      ~VAMP._get_classes_to_inspect
      ~VAMP._get_interpolation_map
      ~VAMP._get_param_names
      ~VAMP._get_private_field
      ~VAMP._get_serialize_fields
      ~VAMP._get_state_of_serializeable_fields
      ~VAMP._get_traj_info
      ~VAMP._get_version
      ~VAMP._get_version_for_class_from_state
      ~VAMP._init_covar
      ~VAMP._logger_is_active
      ~VAMP._map_to_memory
      ~VAMP._set_random_access_strategies
      ~VAMP._set_state_from_serializeable_fields_and_state
      ~VAMP._source_from_memory
      ~VAMP._transform_array
      ~VAMP.cktest
      ~VAMP.describe
      ~VAMP.dimension
      ~VAMP.estimate
      ~VAMP.expectation
      ~VAMP.fit
      ~VAMP.fit_transform
      ~VAMP.get_output
      ~VAMP.get_params
      ~VAMP.iterator
      ~VAMP.load
      ~VAMP.n_chunks
      ~VAMP.n_frames_total
      ~VAMP.number_of_trajectories
      ~VAMP.output_type
      ~VAMP.partial_fit
      ~VAMP.save
      ~VAMP.score
      ~VAMP.set_params
      ~VAMP.trajectory_length
      ~VAMP.trajectory_lengths
      ~VAMP.transform
      ~VAMP.write_to_csv
      ~VAMP.write_to_hdf5
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~VAMP._DataSource__serialize_fields
      ~VAMP._Estimator__serialize_fields
      ~VAMP._FALLBACK_CHUNKSIZE
      ~VAMP._InMemoryMixin__serialize_fields
      ~VAMP._InMemoryMixin__serialize_version
      ~VAMP._Loggable__ids
      ~VAMP._Loggable__refs
      ~VAMP._SerializableMixIn__serialize_fields
      ~VAMP._SerializableMixIn__serialize_modifications_map
      ~VAMP._SerializableMixIn__serialize_version
      ~VAMP._VAMP__serialize_fields
      ~VAMP._VAMP__serialize_version
      ~VAMP.__abstractmethods__
      ~VAMP.__dict__
      ~VAMP.__doc__
      ~VAMP.__module__
      ~VAMP.__weakref__
      ~VAMP._abc_impl
      ~VAMP._estimated
      ~VAMP._loglevel_CRITICAL
      ~VAMP._loglevel_DEBUG
      ~VAMP._loglevel_ERROR
      ~VAMP._loglevel_INFO
      ~VAMP._loglevel_WARN
      ~VAMP._save_data_producer
      ~VAMP._serialize_version
      ~VAMP.chunksize
      ~VAMP.cumvar
      ~VAMP.data_producer
      ~VAMP.default_chunksize
      ~VAMP.dim
      ~VAMP.epsilon
      ~VAMP.filenames
      ~VAMP.in_memory
      ~VAMP.is_random_accessible
      ~VAMP.is_reader
      ~VAMP.logger
      ~VAMP.model
      ~VAMP.name
      ~VAMP.ndim
      ~VAMP.ntraj
      ~VAMP.ra_itraj_cuboid
      ~VAMP.ra_itraj_jagged
      ~VAMP.ra_itraj_linear
      ~VAMP.ra_linear
      ~VAMP.scaling
      ~VAMP.show_progress
      ~VAMP.singular_values
      ~VAMP.singular_vectors_left
      ~VAMP.singular_vectors_right