pyemma.msm.HMSM
===============

.. currentmodule:: pyemma.msm

.. autoclass:: HMSM

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~HMSM._SerializableMixIn__interpolate
      ~HMSM.__delattr__
      ~HMSM.__dir__
      ~HMSM.__eq__
      ~HMSM.__format__
      ~HMSM.__ge__
      ~HMSM.__getattribute__
      ~HMSM.__getstate__
      ~HMSM.__gt__
      ~HMSM.__init__
      ~HMSM.__init_subclass__
      ~HMSM.__le__
      ~HMSM.__lt__
      ~HMSM.__my_getstate__
      ~HMSM.__my_setstate__
      ~HMSM.__ne__
      ~HMSM.__new__
      ~HMSM.__reduce__
      ~HMSM.__reduce_ex__
      ~HMSM.__repr__
      ~HMSM.__setattr__
      ~HMSM.__setstate__
      ~HMSM.__sizeof__
      ~HMSM.__str__
      ~HMSM.__subclasshook__
      ~HMSM._assert_in_active
      ~HMSM._assert_metastable
      ~HMSM._committor_backward
      ~HMSM._committor_forward
      ~HMSM._compute_eigendecomposition
      ~HMSM._compute_eigenvalues
      ~HMSM._ensure_eigendecomposition
      ~HMSM._ensure_eigenvalues
      ~HMSM._get_classes_to_inspect
      ~HMSM._get_interpolation_map
      ~HMSM._get_model_param_names
      ~HMSM._get_private_field
      ~HMSM._get_serialize_fields
      ~HMSM._get_state_of_serializeable_fields
      ~HMSM._get_version
      ~HMSM._get_version_for_class_from_state
      ~HMSM._mfpt
      ~HMSM._set_state_from_serializeable_fields_and_state
      ~HMSM.committor_backward
      ~HMSM.committor_forward
      ~HMSM.correlation
      ~HMSM.eigenvalues
      ~HMSM.eigenvectors_left
      ~HMSM.eigenvectors_right
      ~HMSM.expectation
      ~HMSM.fingerprint_correlation
      ~HMSM.fingerprint_relaxation
      ~HMSM.get_model_params
      ~HMSM.load
      ~HMSM.mfpt
      ~HMSM.pcca
      ~HMSM.propagate
      ~HMSM.relaxation
      ~HMSM.save
      ~HMSM.set_model_params
      ~HMSM.simulate
      ~HMSM.submodel
      ~HMSM.timescales
      ~HMSM.transition_matrix_obs
      ~HMSM.update_model_params
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~HMSM.P
      ~HMSM._HMSM__serialize_version
      ~HMSM._MSM__serialize_fields
      ~HMSM._MSM__serialize_version
      ~HMSM._SerializableMixIn__serialize_fields
      ~HMSM._SerializableMixIn__serialize_modifications_map
      ~HMSM._SerializableMixIn__serialize_version
      ~HMSM.__dict__
      ~HMSM.__doc__
      ~HMSM.__hash__
      ~HMSM.__module__
      ~HMSM.__weakref__
      ~HMSM._save_data_producer
      ~HMSM.dt_model
      ~HMSM.eigenvectors_left_obs
      ~HMSM.eigenvectors_right_obs
      ~HMSM.is_reversible
      ~HMSM.is_sparse
      ~HMSM.lifetimes
      ~HMSM.metastable_assignments
      ~HMSM.metastable_distributions
      ~HMSM.metastable_memberships
      ~HMSM.metastable_sets
      ~HMSM.n_metastable
      ~HMSM.neig
      ~HMSM.nstates
      ~HMSM.nstates_obs
      ~HMSM.observation_probabilities
      ~HMSM.pi
      ~HMSM.reversible
      ~HMSM.sparse
      ~HMSM.stationary_distribution
      ~HMSM.stationary_distribution_obs
      ~HMSM.timestep_model
      ~HMSM.transition_matrix