pyemma.msm.MSM
==============

.. currentmodule:: pyemma.msm

.. autoclass:: MSM

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~MSM._SerializableMixIn__interpolate
      ~MSM.__delattr__
      ~MSM.__dir__
      ~MSM.__eq__
      ~MSM.__format__
      ~MSM.__ge__
      ~MSM.__getattribute__
      ~MSM.__getstate__
      ~MSM.__gt__
      ~MSM.__init__
      ~MSM.__init_subclass__
      ~MSM.__le__
      ~MSM.__lt__
      ~MSM.__my_getstate__
      ~MSM.__my_setstate__
      ~MSM.__ne__
      ~MSM.__new__
      ~MSM.__reduce__
      ~MSM.__reduce_ex__
      ~MSM.__repr__
      ~MSM.__setattr__
      ~MSM.__setstate__
      ~MSM.__sizeof__
      ~MSM.__str__
      ~MSM.__subclasshook__
      ~MSM._assert_in_active
      ~MSM._assert_metastable
      ~MSM._committor_backward
      ~MSM._committor_forward
      ~MSM._compute_eigendecomposition
      ~MSM._compute_eigenvalues
      ~MSM._ensure_eigendecomposition
      ~MSM._ensure_eigenvalues
      ~MSM._get_classes_to_inspect
      ~MSM._get_interpolation_map
      ~MSM._get_model_param_names
      ~MSM._get_private_field
      ~MSM._get_serialize_fields
      ~MSM._get_state_of_serializeable_fields
      ~MSM._get_version
      ~MSM._get_version_for_class_from_state
      ~MSM._mfpt
      ~MSM._set_state_from_serializeable_fields_and_state
      ~MSM.committor_backward
      ~MSM.committor_forward
      ~MSM.correlation
      ~MSM.eigenvalues
      ~MSM.eigenvectors_left
      ~MSM.eigenvectors_right
      ~MSM.expectation
      ~MSM.fingerprint_correlation
      ~MSM.fingerprint_relaxation
      ~MSM.get_model_params
      ~MSM.load
      ~MSM.mfpt
      ~MSM.pcca
      ~MSM.propagate
      ~MSM.relaxation
      ~MSM.save
      ~MSM.set_model_params
      ~MSM.simulate
      ~MSM.timescales
      ~MSM.update_model_params
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~MSM.P
      ~MSM._MSM__serialize_fields
      ~MSM._MSM__serialize_version
      ~MSM._SerializableMixIn__serialize_fields
      ~MSM._SerializableMixIn__serialize_modifications_map
      ~MSM._SerializableMixIn__serialize_version
      ~MSM.__dict__
      ~MSM.__doc__
      ~MSM.__hash__
      ~MSM.__module__
      ~MSM.__weakref__
      ~MSM._save_data_producer
      ~MSM.dt_model
      ~MSM.is_reversible
      ~MSM.is_sparse
      ~MSM.metastable_assignments
      ~MSM.metastable_distributions
      ~MSM.metastable_memberships
      ~MSM.metastable_sets
      ~MSM.n_metastable
      ~MSM.neig
      ~MSM.nstates
      ~MSM.pi
      ~MSM.reversible
      ~MSM.sparse
      ~MSM.stationary_distribution
      ~MSM.timestep_model
      ~MSM.transition_matrix