pyemma.msm.MaximumLikelihoodHMSM
================================

.. currentmodule:: pyemma.msm

.. autoclass:: MaximumLikelihoodHMSM

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~MaximumLikelihoodHMSM._Loggable__create_logger
      ~MaximumLikelihoodHMSM._SerializableMixIn__interpolate
      ~MaximumLikelihoodHMSM.__delattr__
      ~MaximumLikelihoodHMSM.__dir__
      ~MaximumLikelihoodHMSM.__eq__
      ~MaximumLikelihoodHMSM.__format__
      ~MaximumLikelihoodHMSM.__ge__
      ~MaximumLikelihoodHMSM.__getattribute__
      ~MaximumLikelihoodHMSM.__getstate__
      ~MaximumLikelihoodHMSM.__gt__
      ~MaximumLikelihoodHMSM.__init__
      ~MaximumLikelihoodHMSM.__init_subclass__
      ~MaximumLikelihoodHMSM.__le__
      ~MaximumLikelihoodHMSM.__lt__
      ~MaximumLikelihoodHMSM.__my_getstate__
      ~MaximumLikelihoodHMSM.__my_setstate__
      ~MaximumLikelihoodHMSM.__ne__
      ~MaximumLikelihoodHMSM.__new__
      ~MaximumLikelihoodHMSM.__reduce__
      ~MaximumLikelihoodHMSM.__reduce_ex__
      ~MaximumLikelihoodHMSM.__repr__
      ~MaximumLikelihoodHMSM.__setattr__
      ~MaximumLikelihoodHMSM.__setstate__
      ~MaximumLikelihoodHMSM.__sizeof__
      ~MaximumLikelihoodHMSM.__str__
      ~MaximumLikelihoodHMSM.__subclasshook__
      ~MaximumLikelihoodHMSM._assert_in_active
      ~MaximumLikelihoodHMSM._assert_metastable
      ~MaximumLikelihoodHMSM._check_estimated
      ~MaximumLikelihoodHMSM._cleanup_logger
      ~MaximumLikelihoodHMSM._committor_backward
      ~MaximumLikelihoodHMSM._committor_forward
      ~MaximumLikelihoodHMSM._compute_eigendecomposition
      ~MaximumLikelihoodHMSM._compute_eigenvalues
      ~MaximumLikelihoodHMSM._ensure_eigendecomposition
      ~MaximumLikelihoodHMSM._ensure_eigenvalues
      ~MaximumLikelihoodHMSM._estimate
      ~MaximumLikelihoodHMSM._get_classes_to_inspect
      ~MaximumLikelihoodHMSM._get_interpolation_map
      ~MaximumLikelihoodHMSM._get_model_param_names
      ~MaximumLikelihoodHMSM._get_param_names
      ~MaximumLikelihoodHMSM._get_private_field
      ~MaximumLikelihoodHMSM._get_serialize_fields
      ~MaximumLikelihoodHMSM._get_state_of_serializeable_fields
      ~MaximumLikelihoodHMSM._get_version
      ~MaximumLikelihoodHMSM._get_version_for_class_from_state
      ~MaximumLikelihoodHMSM._logger_is_active
      ~MaximumLikelihoodHMSM._mfpt
      ~MaximumLikelihoodHMSM._set_state_from_serializeable_fields_and_state
      ~MaximumLikelihoodHMSM.cktest
      ~MaximumLikelihoodHMSM.committor_backward
      ~MaximumLikelihoodHMSM.committor_forward
      ~MaximumLikelihoodHMSM.correlation
      ~MaximumLikelihoodHMSM.eigenvalues
      ~MaximumLikelihoodHMSM.eigenvectors_left
      ~MaximumLikelihoodHMSM.eigenvectors_right
      ~MaximumLikelihoodHMSM.estimate
      ~MaximumLikelihoodHMSM.expectation
      ~MaximumLikelihoodHMSM.fingerprint_correlation
      ~MaximumLikelihoodHMSM.fingerprint_relaxation
      ~MaximumLikelihoodHMSM.fit
      ~MaximumLikelihoodHMSM.get_model_params
      ~MaximumLikelihoodHMSM.get_params
      ~MaximumLikelihoodHMSM.load
      ~MaximumLikelihoodHMSM.mfpt
      ~MaximumLikelihoodHMSM.pcca
      ~MaximumLikelihoodHMSM.propagate
      ~MaximumLikelihoodHMSM.relaxation
      ~MaximumLikelihoodHMSM.sample_by_observation_probabilities
      ~MaximumLikelihoodHMSM.save
      ~MaximumLikelihoodHMSM.set_model_params
      ~MaximumLikelihoodHMSM.set_params
      ~MaximumLikelihoodHMSM.simulate
      ~MaximumLikelihoodHMSM.submodel
      ~MaximumLikelihoodHMSM.submodel_disconnect
      ~MaximumLikelihoodHMSM.submodel_largest
      ~MaximumLikelihoodHMSM.submodel_populous
      ~MaximumLikelihoodHMSM.timescales
      ~MaximumLikelihoodHMSM.trajectory_weights
      ~MaximumLikelihoodHMSM.transition_matrix_obs
      ~MaximumLikelihoodHMSM.update_model_params
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~MaximumLikelihoodHMSM.P
      ~MaximumLikelihoodHMSM._Estimator__serialize_fields
      ~MaximumLikelihoodHMSM._HMSM__serialize_version
      ~MaximumLikelihoodHMSM._Loggable__ids
      ~MaximumLikelihoodHMSM._Loggable__refs
      ~MaximumLikelihoodHMSM._MSM__serialize_fields
      ~MaximumLikelihoodHMSM._MSM__serialize_version
      ~MaximumLikelihoodHMSM._MaximumLikelihoodHMSM__serialize_fields
      ~MaximumLikelihoodHMSM._MaximumLikelihoodHMSM__serialize_version
      ~MaximumLikelihoodHMSM._SerializableMixIn__serialize_fields
      ~MaximumLikelihoodHMSM._SerializableMixIn__serialize_modifications_map
      ~MaximumLikelihoodHMSM._SerializableMixIn__serialize_version
      ~MaximumLikelihoodHMSM.__dict__
      ~MaximumLikelihoodHMSM.__doc__
      ~MaximumLikelihoodHMSM.__hash__
      ~MaximumLikelihoodHMSM.__module__
      ~MaximumLikelihoodHMSM.__weakref__
      ~MaximumLikelihoodHMSM._estimated
      ~MaximumLikelihoodHMSM._loglevel_CRITICAL
      ~MaximumLikelihoodHMSM._loglevel_DEBUG
      ~MaximumLikelihoodHMSM._loglevel_ERROR
      ~MaximumLikelihoodHMSM._loglevel_INFO
      ~MaximumLikelihoodHMSM._loglevel_WARN
      ~MaximumLikelihoodHMSM._save_data_producer
      ~MaximumLikelihoodHMSM.active_set
      ~MaximumLikelihoodHMSM.discrete_trajectories_full
      ~MaximumLikelihoodHMSM.discrete_trajectories_lagged
      ~MaximumLikelihoodHMSM.discrete_trajectories_obs
      ~MaximumLikelihoodHMSM.dt_model
      ~MaximumLikelihoodHMSM.dt_traj
      ~MaximumLikelihoodHMSM.dtrajs_full
      ~MaximumLikelihoodHMSM.dtrajs_lagged
      ~MaximumLikelihoodHMSM.dtrajs_obs
      ~MaximumLikelihoodHMSM.eigenvectors_left_obs
      ~MaximumLikelihoodHMSM.eigenvectors_right_obs
      ~MaximumLikelihoodHMSM.is_reversible
      ~MaximumLikelihoodHMSM.is_sparse
      ~MaximumLikelihoodHMSM.lagtime
      ~MaximumLikelihoodHMSM.lifetimes
      ~MaximumLikelihoodHMSM.logger
      ~MaximumLikelihoodHMSM.metastable_assignments
      ~MaximumLikelihoodHMSM.metastable_distributions
      ~MaximumLikelihoodHMSM.metastable_memberships
      ~MaximumLikelihoodHMSM.metastable_sets
      ~MaximumLikelihoodHMSM.model
      ~MaximumLikelihoodHMSM.msm_init
      ~MaximumLikelihoodHMSM.n_metastable
      ~MaximumLikelihoodHMSM.name
      ~MaximumLikelihoodHMSM.neig
      ~MaximumLikelihoodHMSM.nstates
      ~MaximumLikelihoodHMSM.nstates_obs
      ~MaximumLikelihoodHMSM.observable_set
      ~MaximumLikelihoodHMSM.observable_state_indexes
      ~MaximumLikelihoodHMSM.observation_probabilities
      ~MaximumLikelihoodHMSM.pi
      ~MaximumLikelihoodHMSM.reversible
      ~MaximumLikelihoodHMSM.sparse
      ~MaximumLikelihoodHMSM.stationary_distribution
      ~MaximumLikelihoodHMSM.stationary_distribution_obs
      ~MaximumLikelihoodHMSM.timestep_model
      ~MaximumLikelihoodHMSM.transition_matrix