pyemma.msm.MaximumLikelihoodMSM
===============================

.. currentmodule:: pyemma.msm

.. autoclass:: MaximumLikelihoodMSM

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~MaximumLikelihoodMSM._Loggable__create_logger
      ~MaximumLikelihoodMSM._SerializableMixIn__interpolate
      ~MaximumLikelihoodMSM.__delattr__
      ~MaximumLikelihoodMSM.__dir__
      ~MaximumLikelihoodMSM.__eq__
      ~MaximumLikelihoodMSM.__format__
      ~MaximumLikelihoodMSM.__ge__
      ~MaximumLikelihoodMSM.__getattribute__
      ~MaximumLikelihoodMSM.__getstate__
      ~MaximumLikelihoodMSM.__gt__
      ~MaximumLikelihoodMSM.__init__
      ~MaximumLikelihoodMSM.__init_subclass__
      ~MaximumLikelihoodMSM.__le__
      ~MaximumLikelihoodMSM.__lt__
      ~MaximumLikelihoodMSM.__my_getstate__
      ~MaximumLikelihoodMSM.__my_setstate__
      ~MaximumLikelihoodMSM.__ne__
      ~MaximumLikelihoodMSM.__new__
      ~MaximumLikelihoodMSM.__reduce__
      ~MaximumLikelihoodMSM.__reduce_ex__
      ~MaximumLikelihoodMSM.__repr__
      ~MaximumLikelihoodMSM.__setattr__
      ~MaximumLikelihoodMSM.__setstate__
      ~MaximumLikelihoodMSM.__sizeof__
      ~MaximumLikelihoodMSM.__str__
      ~MaximumLikelihoodMSM.__subclasshook__
      ~MaximumLikelihoodMSM._assert_in_active
      ~MaximumLikelihoodMSM._assert_metastable
      ~MaximumLikelihoodMSM._blocksplit_dtrajs
      ~MaximumLikelihoodMSM._check_estimated
      ~MaximumLikelihoodMSM._check_is_estimated
      ~MaximumLikelihoodMSM._cleanup_logger
      ~MaximumLikelihoodMSM._committor_backward
      ~MaximumLikelihoodMSM._committor_forward
      ~MaximumLikelihoodMSM._compute_eigendecomposition
      ~MaximumLikelihoodMSM._compute_eigenvalues
      ~MaximumLikelihoodMSM._ensure_eigendecomposition
      ~MaximumLikelihoodMSM._ensure_eigenvalues
      ~MaximumLikelihoodMSM._estimate
      ~MaximumLikelihoodMSM._get_classes_to_inspect
      ~MaximumLikelihoodMSM._get_dtraj_stats
      ~MaximumLikelihoodMSM._get_interpolation_map
      ~MaximumLikelihoodMSM._get_model_param_names
      ~MaximumLikelihoodMSM._get_param_names
      ~MaximumLikelihoodMSM._get_private_field
      ~MaximumLikelihoodMSM._get_serialize_fields
      ~MaximumLikelihoodMSM._get_state_of_serializeable_fields
      ~MaximumLikelihoodMSM._get_version
      ~MaximumLikelihoodMSM._get_version_for_class_from_state
      ~MaximumLikelihoodMSM._logger_is_active
      ~MaximumLikelihoodMSM._mfpt
      ~MaximumLikelihoodMSM._prepare_input_revpi
      ~MaximumLikelihoodMSM._set_state_from_serializeable_fields_and_state
      ~MaximumLikelihoodMSM.cktest
      ~MaximumLikelihoodMSM.coarse_grain
      ~MaximumLikelihoodMSM.committor_backward
      ~MaximumLikelihoodMSM.committor_forward
      ~MaximumLikelihoodMSM.correlation
      ~MaximumLikelihoodMSM.eigenvalues
      ~MaximumLikelihoodMSM.eigenvectors_left
      ~MaximumLikelihoodMSM.eigenvectors_right
      ~MaximumLikelihoodMSM.estimate
      ~MaximumLikelihoodMSM.expectation
      ~MaximumLikelihoodMSM.fingerprint_correlation
      ~MaximumLikelihoodMSM.fingerprint_relaxation
      ~MaximumLikelihoodMSM.fit
      ~MaximumLikelihoodMSM.generate_traj
      ~MaximumLikelihoodMSM.get_model_params
      ~MaximumLikelihoodMSM.get_params
      ~MaximumLikelihoodMSM.hmm
      ~MaximumLikelihoodMSM.load
      ~MaximumLikelihoodMSM.mfpt
      ~MaximumLikelihoodMSM.pcca
      ~MaximumLikelihoodMSM.propagate
      ~MaximumLikelihoodMSM.relaxation
      ~MaximumLikelihoodMSM.sample_by_distributions
      ~MaximumLikelihoodMSM.sample_by_state
      ~MaximumLikelihoodMSM.save
      ~MaximumLikelihoodMSM.score
      ~MaximumLikelihoodMSM.score_cv
      ~MaximumLikelihoodMSM.set_model_params
      ~MaximumLikelihoodMSM.set_params
      ~MaximumLikelihoodMSM.simulate
      ~MaximumLikelihoodMSM.timescales
      ~MaximumLikelihoodMSM.trajectory_weights
      ~MaximumLikelihoodMSM.update_model_params
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~MaximumLikelihoodMSM.P
      ~MaximumLikelihoodMSM._Estimator__serialize_fields
      ~MaximumLikelihoodMSM._Loggable__ids
      ~MaximumLikelihoodMSM._Loggable__refs
      ~MaximumLikelihoodMSM._MSMEstimator__serialize_fields
      ~MaximumLikelihoodMSM._MSMEstimator__serialize_version
      ~MaximumLikelihoodMSM._MSM__serialize_fields
      ~MaximumLikelihoodMSM._MSM__serialize_version
      ~MaximumLikelihoodMSM._MaximumLikelihoodMSM__serialize_fields
      ~MaximumLikelihoodMSM._MaximumLikelihoodMSM__serialize_version
      ~MaximumLikelihoodMSM._SerializableMixIn__serialize_fields
      ~MaximumLikelihoodMSM._SerializableMixIn__serialize_modifications_map
      ~MaximumLikelihoodMSM._SerializableMixIn__serialize_version
      ~MaximumLikelihoodMSM.__dict__
      ~MaximumLikelihoodMSM.__doc__
      ~MaximumLikelihoodMSM.__hash__
      ~MaximumLikelihoodMSM.__module__
      ~MaximumLikelihoodMSM.__weakref__
      ~MaximumLikelihoodMSM._estimated
      ~MaximumLikelihoodMSM._loglevel_CRITICAL
      ~MaximumLikelihoodMSM._loglevel_DEBUG
      ~MaximumLikelihoodMSM._loglevel_ERROR
      ~MaximumLikelihoodMSM._loglevel_INFO
      ~MaximumLikelihoodMSM._loglevel_WARN
      ~MaximumLikelihoodMSM._save_data_producer
      ~MaximumLikelihoodMSM.active_count_fraction
      ~MaximumLikelihoodMSM.active_set
      ~MaximumLikelihoodMSM.active_state_fraction
      ~MaximumLikelihoodMSM.active_state_indexes
      ~MaximumLikelihoodMSM.connected_sets
      ~MaximumLikelihoodMSM.connectivity
      ~MaximumLikelihoodMSM.core_set
      ~MaximumLikelihoodMSM.count_matrix_active
      ~MaximumLikelihoodMSM.count_matrix_full
      ~MaximumLikelihoodMSM.discrete_trajectories_active
      ~MaximumLikelihoodMSM.discrete_trajectories_full
      ~MaximumLikelihoodMSM.discrete_trajectories_unmodified
      ~MaximumLikelihoodMSM.dt_model
      ~MaximumLikelihoodMSM.dt_traj
      ~MaximumLikelihoodMSM.dtrajs_active
      ~MaximumLikelihoodMSM.dtrajs_full
      ~MaximumLikelihoodMSM.dtrajs_milestone_counting_offsets
      ~MaximumLikelihoodMSM.dtrajs_unmodified
      ~MaximumLikelihoodMSM.effective_count_matrix
      ~MaximumLikelihoodMSM.is_reversible
      ~MaximumLikelihoodMSM.is_sparse
      ~MaximumLikelihoodMSM.lag
      ~MaximumLikelihoodMSM.lagtime
      ~MaximumLikelihoodMSM.largest_connected_set
      ~MaximumLikelihoodMSM.logger
      ~MaximumLikelihoodMSM.metastable_assignments
      ~MaximumLikelihoodMSM.metastable_distributions
      ~MaximumLikelihoodMSM.metastable_memberships
      ~MaximumLikelihoodMSM.metastable_sets
      ~MaximumLikelihoodMSM.model
      ~MaximumLikelihoodMSM.n_metastable
      ~MaximumLikelihoodMSM.name
      ~MaximumLikelihoodMSM.neig
      ~MaximumLikelihoodMSM.nstates
      ~MaximumLikelihoodMSM.nstates_full
      ~MaximumLikelihoodMSM.pi
      ~MaximumLikelihoodMSM.reversible
      ~MaximumLikelihoodMSM.sparse
      ~MaximumLikelihoodMSM.stationary_distribution
      ~MaximumLikelihoodMSM.timestep_model
      ~MaximumLikelihoodMSM.transition_matrix