pyemma.msm.OOMReweightedMSM
===========================

.. currentmodule:: pyemma.msm

.. autoclass:: OOMReweightedMSM

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~OOMReweightedMSM._Loggable__create_logger
      ~OOMReweightedMSM._SerializableMixIn__interpolate
      ~OOMReweightedMSM.__delattr__
      ~OOMReweightedMSM.__dir__
      ~OOMReweightedMSM.__eq__
      ~OOMReweightedMSM.__format__
      ~OOMReweightedMSM.__ge__
      ~OOMReweightedMSM.__getattribute__
      ~OOMReweightedMSM.__getstate__
      ~OOMReweightedMSM.__gt__
      ~OOMReweightedMSM.__init__
      ~OOMReweightedMSM.__init_subclass__
      ~OOMReweightedMSM.__le__
      ~OOMReweightedMSM.__lt__
      ~OOMReweightedMSM.__my_getstate__
      ~OOMReweightedMSM.__my_setstate__
      ~OOMReweightedMSM.__ne__
      ~OOMReweightedMSM.__new__
      ~OOMReweightedMSM.__reduce__
      ~OOMReweightedMSM.__reduce_ex__
      ~OOMReweightedMSM.__repr__
      ~OOMReweightedMSM.__setattr__
      ~OOMReweightedMSM.__setstate__
      ~OOMReweightedMSM.__sizeof__
      ~OOMReweightedMSM.__str__
      ~OOMReweightedMSM.__subclasshook__
      ~OOMReweightedMSM._assert_in_active
      ~OOMReweightedMSM._assert_metastable
      ~OOMReweightedMSM._blocksplit_dtrajs
      ~OOMReweightedMSM._check_estimated
      ~OOMReweightedMSM._check_is_estimated
      ~OOMReweightedMSM._cleanup_logger
      ~OOMReweightedMSM._committor_backward
      ~OOMReweightedMSM._committor_forward
      ~OOMReweightedMSM._compute_eigendecomposition
      ~OOMReweightedMSM._compute_eigenvalues
      ~OOMReweightedMSM._ensure_eigendecomposition
      ~OOMReweightedMSM._ensure_eigenvalues
      ~OOMReweightedMSM._estimate
      ~OOMReweightedMSM._get_classes_to_inspect
      ~OOMReweightedMSM._get_dtraj_stats
      ~OOMReweightedMSM._get_interpolation_map
      ~OOMReweightedMSM._get_model_param_names
      ~OOMReweightedMSM._get_param_names
      ~OOMReweightedMSM._get_private_field
      ~OOMReweightedMSM._get_serialize_fields
      ~OOMReweightedMSM._get_state_of_serializeable_fields
      ~OOMReweightedMSM._get_version
      ~OOMReweightedMSM._get_version_for_class_from_state
      ~OOMReweightedMSM._logger_is_active
      ~OOMReweightedMSM._mfpt
      ~OOMReweightedMSM._set_state_from_serializeable_fields_and_state
      ~OOMReweightedMSM.cktest
      ~OOMReweightedMSM.coarse_grain
      ~OOMReweightedMSM.committor_backward
      ~OOMReweightedMSM.committor_forward
      ~OOMReweightedMSM.correlation
      ~OOMReweightedMSM.eigenvalues
      ~OOMReweightedMSM.eigenvectors_left
      ~OOMReweightedMSM.eigenvectors_right
      ~OOMReweightedMSM.estimate
      ~OOMReweightedMSM.expectation
      ~OOMReweightedMSM.fingerprint_correlation
      ~OOMReweightedMSM.fingerprint_relaxation
      ~OOMReweightedMSM.fit
      ~OOMReweightedMSM.generate_traj
      ~OOMReweightedMSM.get_model_params
      ~OOMReweightedMSM.get_params
      ~OOMReweightedMSM.hmm
      ~OOMReweightedMSM.load
      ~OOMReweightedMSM.mfpt
      ~OOMReweightedMSM.pcca
      ~OOMReweightedMSM.propagate
      ~OOMReweightedMSM.relaxation
      ~OOMReweightedMSM.sample_by_distributions
      ~OOMReweightedMSM.sample_by_state
      ~OOMReweightedMSM.save
      ~OOMReweightedMSM.score
      ~OOMReweightedMSM.score_cv
      ~OOMReweightedMSM.set_model_params
      ~OOMReweightedMSM.set_params
      ~OOMReweightedMSM.simulate
      ~OOMReweightedMSM.timescales
      ~OOMReweightedMSM.trajectory_weights
      ~OOMReweightedMSM.update_model_params
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~OOMReweightedMSM.OOM_components
      ~OOMReweightedMSM.OOM_omega
      ~OOMReweightedMSM.OOM_rank
      ~OOMReweightedMSM.OOM_sigma
      ~OOMReweightedMSM.P
      ~OOMReweightedMSM._Estimator__serialize_fields
      ~OOMReweightedMSM._Loggable__ids
      ~OOMReweightedMSM._Loggable__refs
      ~OOMReweightedMSM._MSMEstimator__serialize_fields
      ~OOMReweightedMSM._MSMEstimator__serialize_version
      ~OOMReweightedMSM._MSM__serialize_fields
      ~OOMReweightedMSM._MSM__serialize_version
      ~OOMReweightedMSM._OOMReweightedMSM__serialize_fields
      ~OOMReweightedMSM._OOMReweightedMSM__serialize_version
      ~OOMReweightedMSM._SerializableMixIn__serialize_fields
      ~OOMReweightedMSM._SerializableMixIn__serialize_modifications_map
      ~OOMReweightedMSM._SerializableMixIn__serialize_version
      ~OOMReweightedMSM.__dict__
      ~OOMReweightedMSM.__doc__
      ~OOMReweightedMSM.__hash__
      ~OOMReweightedMSM.__module__
      ~OOMReweightedMSM.__weakref__
      ~OOMReweightedMSM._estimated
      ~OOMReweightedMSM._loglevel_CRITICAL
      ~OOMReweightedMSM._loglevel_DEBUG
      ~OOMReweightedMSM._loglevel_ERROR
      ~OOMReweightedMSM._loglevel_INFO
      ~OOMReweightedMSM._loglevel_WARN
      ~OOMReweightedMSM._save_data_producer
      ~OOMReweightedMSM.active_count_fraction
      ~OOMReweightedMSM.active_set
      ~OOMReweightedMSM.active_state_fraction
      ~OOMReweightedMSM.active_state_indexes
      ~OOMReweightedMSM.connected_sets
      ~OOMReweightedMSM.connectivity
      ~OOMReweightedMSM.core_set
      ~OOMReweightedMSM.count_matrix_active
      ~OOMReweightedMSM.count_matrix_full
      ~OOMReweightedMSM.discrete_trajectories_active
      ~OOMReweightedMSM.discrete_trajectories_full
      ~OOMReweightedMSM.discrete_trajectories_unmodified
      ~OOMReweightedMSM.dt_model
      ~OOMReweightedMSM.dt_traj
      ~OOMReweightedMSM.dtrajs_active
      ~OOMReweightedMSM.dtrajs_full
      ~OOMReweightedMSM.dtrajs_milestone_counting_offsets
      ~OOMReweightedMSM.dtrajs_unmodified
      ~OOMReweightedMSM.eigenvalues_OOM
      ~OOMReweightedMSM.is_reversible
      ~OOMReweightedMSM.is_sparse
      ~OOMReweightedMSM.lag
      ~OOMReweightedMSM.lagtime
      ~OOMReweightedMSM.largest_connected_set
      ~OOMReweightedMSM.logger
      ~OOMReweightedMSM.metastable_assignments
      ~OOMReweightedMSM.metastable_distributions
      ~OOMReweightedMSM.metastable_memberships
      ~OOMReweightedMSM.metastable_sets
      ~OOMReweightedMSM.model
      ~OOMReweightedMSM.n_metastable
      ~OOMReweightedMSM.name
      ~OOMReweightedMSM.neig
      ~OOMReweightedMSM.nstates
      ~OOMReweightedMSM.nstates_full
      ~OOMReweightedMSM.pi
      ~OOMReweightedMSM.reversible
      ~OOMReweightedMSM.sparse
      ~OOMReweightedMSM.stationary_distribution
      ~OOMReweightedMSM.timescales_OOM
      ~OOMReweightedMSM.timestep_model
      ~OOMReweightedMSM.transition_matrix