Plotting package¶
The plots package provides tools to plot scientific data generated by pyEMMA
plots - Plotting tools (pyemma.plots
)¶
User-API¶
Graph plots
plot_implied_timescales (ITS[, ax, outfile, ...]) |
Implied timescale plot |
plot_cktest (cktest[, figsize, diag, y01, ...]) |
Plot of Chapman-Kolmogorov test |
Contour plots
plot_free_energy (xall, yall[, weights, ax, ...]) |
Free energy plot given 2D scattered data |
scatter_contour (x, y, z[, ncontours, ...]) |
Contour plot on scattered data (x,y,z) and the plots the positions of the points (x,y) on top. |
Network plots
plot_markov_model (P[, pos, state_sizes, ...]) |
Network representation of MSM transition matrix |
plot_flux (flux[, pos, state_sizes, ...]) |
Network representation of reactive flux |
plot_network (weights[, pos, xpos, ypos, ...]) |
Network representation of given matrix |
Classes¶
NetworkPlot (A[, pos, xpos, ypos, ax]) |
Plot of network with nodes and arcs |