data - Data and input/output utilities (pyemma.coordinates.data)¶
Order parameters¶
MDFeaturizer(topfile, **kwargs) |
Extracts features from MD trajectories. |
CustomFeature(fun, dim[, description, …]) |
A CustomFeature is the base class for user-defined features. |
Reader¶
FeatureReader(trajectories[, topologyfile, …]) |
Reads features from MD data. |
NumPyFileReader(filenames[, chunksize, …]) |
|
PyCSVReader(filenames[, chunksize, …]) |
Reader for tabulated ASCII data |
DataInMemory(data[, chunksize]) |
multi-dimensional data fully stored in memory. |
FragmentedTrajectoryReader(trajectories[, …]) |