PyEMMA API

The API is currently divided into two main parts:

• Coordinates package (pyemma.coordinates)
  • User API
  • Classes
  • Implementation
• Markov State Models package (pyemma.msm)
  • User API
  • MSM functions (low-level API)

Plotting functions for aiding in the scientific analysis are found here:

• Plotting API
  • plots - Plotting tools (pyemma.plots)