data - Data and input/output utilities (pyemma.coordinates.data)

Order parameters

MDFeaturizer(topfile, **kwargs)

Extracts features from MD trajectories.

CustomFeature(fun, dim[, description, …])

A CustomFeature is the base class for user-defined features.

Reader

FeatureReader(trajectories[, topologyfile, …])

Reads features from MD data.

NumPyFileReader(filenames[, chunksize, …])

PyCSVReader(filenames[, chunksize, …])

Reader for tabulated ASCII data

DataInMemory(data[, chunksize])

multi-dimensional data fully stored in memory.

FragmentedTrajectoryReader(trajectories[, …])