transform - Transformation Utilities (pyemma.coordinates.transform)

PCA([dim, var_cutoff, mean, stride, skip])

Principal component analysis.

TICA(lag[, dim, var_cutoff, kinetic_map, …])

Time-lagged independent component analysis (TICA)

VAMP(lag[, dim, scaling, right, epsilon, …])

Variational approach for Markov processes (VAMP)

VAMPModel([mean_0, mean_t, C00, Ctt, C0t, …])

VAMPChapmanKolmogorovValidator(test_model, …)