pyemma.msm.io.load_discrete_trajectory

pyemma.msm.io.load_discrete_trajectory(filename)

Read discrete trajectory form binary file.

Parameters:filename (str) – The filename of the discrete state trajectory file. The filename can either contain the full or the relative path to the file. Returns:dtraj – Discrete state trajectory Return type:(M,) ndarray of int

See also

save_discrete_trajectory()

Notes

The binary file is a one dimensional numpy array of integers stored in numpy .npy format.

Examples

>>> from tempfile import NamedTemporaryFile
>>> from pyemma.msm.io import load_discrete_trajectory, save_discrete_trajectory

Use temporary file

>>> tmpfile = NamedTemporaryFile()

Discrete trajectory

>>> dtraj = np.array([0, 1, 0, 0, 1, 1, 0])

Write to disk (as ascii file)

>>> save_discrete_trajectory(tmpfile.name, dtraj)

Read from disk

>>> X = load_discrete_trajectory(tmpfile.name)
>>> X
array([0, 1, 0, 0, 1, 1, 0])