msmtools.dtraj.count_states

msmtools.dtraj.count_states(dtrajs, ignore_negative=False)

returns a histogram count

Parameters:

• dtrajs (array_like or list of array_like) – Discretized trajectory or list of discretized trajectories
• bool, default=False (ignore_negative,) – Ignore negative elements. By default, a negative element will cause an exception

Returns:

count – the number of occurrances of each state. n=max+1 where max is the largest state index found.

Return type:

ndarray((n), dtype=int)