pyemma.coordinates.pipelines.Pipeline

class pyemma.coordinates.pipelines.Pipeline(chain, chunksize=100, param_stride=1)

Data processing pipeline.

__init__(chain, chunksize=100, param_stride=1)

Data processing pipeline.

Parameters:
  • chain (list of transformers like objects) – the order in the list defines the direction of data flow.
  • chunksize (int, optional) – how many frames shall be processed at once.
  • param_stride (int, optional) – omit every n’th data point

Methods

__init__(chain[, chunksize, param_stride]) Data processing pipeline.
add_element(e) Appends a pipeline stage.
parametrize() Reads all data and discretizes it into discrete trajectories.
set_element(index, e) Replaces a pipeline stage.

Attributes

chunksize
add_element(e)

Appends a pipeline stage.

Appends the given element to the end of the current chain.

parametrize()

Reads all data and discretizes it into discrete trajectories.

set_element(index, e)

Replaces a pipeline stage.

Replace an element in chain and return replaced element.